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how to reference the plugins used - QIIME 2 Forum I wanted to ask if anyone can help me to know how to cite the qiime plugins (permanova, shannon, observed features, evenness, faith phylogenetic tree, braycurtis, scenic plugin, taxa barplot, and picrust2) See this page for more details and an example (that covers some of the methods you mentioned):
Importing bins mags into Qiime2 - Technical Support - QIIME 2 Forum Dear devs, dear users I am processing metagenome dataset I currently follow the q2-moshpit: A set of tutorials showcasing shotgun metagenomics analysis workflows, but I modified some steps I assembled metagenomes and binned samples outside of Qiime2 So, for each sample, I have bins that are not dereplicated and not filtered My plan is to import all the bins together into Qiime2, filter
PhD Opportunity - Soil Microbial Ecology - QIIME 2 Forum UTSA is a public research university and a Hispanic-Serving Institution located in scenic San Antonio, Texas The main campus, where the graduate position will be housed, enrolls ~34,000 students and has a diverse set of collaborative groups spanning ecology, microbiology, geosciences, and natural resource management
q2-SCNIC installation - Library Support - QIIME 2 Forum I'm new to using QIIME2 I have installation problem with q2-SCNIC now I fallowed this installation guide GitHub - lozuponelab q2-SCNIC: A QIIME2 plugin for running SCNIC and it has been installed successfully
PERMANOVA results significant, but differential abundance results . . . Hello, I am performing a study about differences in microbial communities between two sample types in an Antarctic ecosystem According to PERMANOVA, there are significant differences between communities of the two sample types However, when performing differential abundance analysis (Tried ANCOM and LEFSE so far) and performing Holm p-value correction, I detect zero significantly different
Importing NCBI SRA sequences - User Support - QIIME 2 Forum Hello everyone, I have downloaded some sequences from NCBI and I am having some troubles uploading them into qiime The sequences are forward and reverse and look like this: @SRR8243471 1 1 length=301