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MAFFT - a multiple sequence alignment program - CBRC MAFFT is a multiple sequence alignment program for unix-like operating systems It offers a range of multiple alignment methods, L-INS-i (accurate; for alignment of <∼200 sequences), FFT-NS-2 (fast; for alignment of <∼30,000 sequences), etc
MAFFT alignment and NJ UPGMA phylogeny - CBRC MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization Kuraku, Zmasek, Nishimura, Katoh 2013 (Nucleic Acids Research 41:W22-W28)
MAFFT - a multiple sequence alignment program - CBRC Accurate options (mafft-linsi, mafft-ginsi and mafft-einsi), instead of mafft, can be used for a few hundreds of sequences aligned_sequences must form a monophyletic cluster, as they are converted into a single profile
MAFFT - a multiple sequence alignment program - CBRC This procedure requires root access, as programs are installed into usr local bin and usr local libexec mafft by default If you want to install MAFFT without being root, see here
MAFFT for Windows - a multiple sequence alignment program Copy the downloaded zip file into a folder to install MAFFT Better to avoid the Desktop and Documents folders, because these folders may be protected by "Controlled folder access" in "Ransomware protection" in Windows Defender
Manpage of MAFFT - CBRC Indicates the location of the binary files used by mafft By default, they are searched in usr local lib mafft, but on Debian systems, they are searched in usr lib mafft
MAFFT ver. 7 - a multiple sequence alignment program - CBRC MAFFT requires memory space proportional to L2 by default, where L is sequence length When the --memsave option is added or alignment length exceeds a threshold, a linear-space DP algorithm similar to Myers Miller (1988) is used
MAFFT for linux - a multiple sequence alignment program Root privileges are necessary % su - Password: ********* # dpkg -i mafft_x xxx-x_amd64 deb # exit % rehash (if necessary) A shell script, mafft, is installed into usr bin and some binaries are installed into usr libexec mafft License deb (maintained by Debian Med) Source Portable package (BSD license) Conda Usage % mafft input > output