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  • GitHub - Yunuuuu sequenza: A backup of official sequenza repos
    Sequenza is a tool to analyze genomic sequencing data from paired normal-tumor samples, including cellularity and ploidy estimation; mutation and copy number (allele-specific and total copy number) detection, quantification and visualization
  • Sequenza-utils — sequenza-utils 2. 2. 0 documentation
    Sequenza is a software for the estimation and quantification of purity ploidy and copy number alteration in sequencing experiments of tumor samples Sequenza-utils provide command lines programs to transform common NGS file format - such as BAM, pileup and VCF - to input files for the R package
  • Sequenza: allele-specific copy number and mutation profiles from tumor . . .
    We developed Sequenza, a software package that uses paired tumor-normal DNA sequencing data to estimate tumor cellularity and ploidy, and to calculate allele-specific copy number profiles and mutation profiles We applied Sequenza, as well as two previously published algorithms, to exome sequence data from 30 tumors from The Cancer Genome Atlas
  • sequenza package - RDocumentation
    Tools to analyze genomic sequencing data from paired normal-tumor samples, including cellularity and ploidy estimation; mutation and copy number (allele-specific and total copy number) detection, quantification and visualization
  • Sequenza projects | Sequenza
    Sequenza is a tool to analyze genomic sequencing data from paired normal-tumor samples, including cellularity and ploidy estimation; mutation and copy number (allele-specific and total copy number) detection, quantification and visualization
  • R Sequenza | Anaconda. org
    Tools to analyze genomic sequencing data from paired normal-tumor samples, including cellularity and ploidy estimation; mutation and copy number (allele-specific and total copy number) detection, quantification and visualization Info: This package contains files in non-standard labels
  • sequenzatools sequenza — Bitbucket
    This package provides tools to analyze cancer NGS data, including cellularity and ploidy estimation, mutation and copy number detection and quantification, detection of mono-allelic expression and allelic subclonal mutation classification Normally, you'd see the directory here, but something didn't go right
  • sequenza: Copy Number Estimation from Tumor Genome Sequencing Data
    Tools to analyze genomic sequencing data from paired normal-tumor samples, including cellularity and ploidy estimation; mutation and copy number (allele-specific and total copy number) detection, quantification and visualization




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