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  • ChIPseeker vignettes ChIPseeker. Rmd at devel · YuLab-SMU . . . - GitHub
    :dart: ChIP peak Annotation, Comparison and Visualization - YuLab-SMU ChIPseeker
  • Bioconductor - Home
    由于此网站的设置,我们无法提供该页面的具体描述。
  • CS6: ChIP数据可视化 - Guangchuang Yu
    另外你可以直接从文件出发,ChIPseeker提供了 peakHeatmap 函数,你给文件名,就可以直接出图,两个函数都支持多种数据同时展示,方便比较,这里可以看出前三个样品结合位点不在转录起始区域,而后两个则是。
  • ChIPseeker对ChIP - HelloWorld开发者社区
    点击上方“蓝字”带你去看小星星 Y叔开发的 ChIPseeker 包,主要是为了能 对ChIP-seq数据进行注释与可视化,主要对peak位置及peak邻近基因的注释。然而,在之后对ChIPseeker的应用中,发现它不局限于ChIP-seq,可用于其他的peak(如ATAC-seq,DNase-seq等富集得到的)注释,甚至还可用于long intergenic non-coding RNAs
  • 学习一遍ChIPseeker的使用 | Sci-Tech-Notes
    在看完数据全景之后,就会想知道这些peaks和什么类型的基因有关 4 annotatePeak进行peaks的注释 需要使用BED文件(作为query)+注释文件(作为target) 重点是如何获取注释文件 注释信息一般要包含基因的起始终止,基因的外显子、内含子及它们的起始终止、非编码区域位置、功能元件的位置等 ChIPseeker没
  • peakHeatmap split. default error · Issue #228 · YuLab-SMU ChIPseeker
    When I run peakHeatmap, I am getting the following error: peakHeatmap(MYB3sortGR, TxDb = txdb, upstream = 500, downstream = 500, ignore_strand = TRUE) preparing promoter regions 2024-01-13 02:13
  • ChIPseeker vignettes ChIPseeker. Rmd at devel · YuLab-SMU . . . - GitHub
    Chromatin immunoprecipitation followed by high-throughput sequencing (ChIP-seq) has become standard technologies for genome wide identification of DNA-binding protein target sites After read mappings and peak callings, the peak should be annotated to answer the biological questions Annotation also create the possibility of integrating expression profile data to predict gene expression
  • 2020-04-09重新学习Y叔的ChIPseeker系列 - 简书
    参考学习资料 CS0: ChIPseq从入门到放弃 CS1: ChIPseq简介 CS2: BED文件 CS3: peak注释 CS4:关于ChIPseq注释的几个问题 CS5: 吃着火锅,唱着歌,还把分析给做了 CS6: ChIPseeker的可视化方法(中秋节的视觉饕餮) CS7:Genomic coordination的富集性分析(1) CS8:Genomic coordination的富集性分析(2) CS9: GEO数据挖掘 CS10: 八卦




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