Pilon | Broad Institute Pilon uses read alignment analysis to diagnose, report, and automatically improve genome assemblies, and it can also be used to make variant calls among similar haploid strains
Releases · broadinstitute pilon - GitHub Pilon version 1 19 includes a new experimental feature specifically for improving PacBio bacterial assemblies generated by HGAP Falcon by identifying circular elements (chromosome or plasmids) and trimming them for circular continuity