- MAFFT - a multiple sequence alignment program - CBRC
MAFFT is a multiple sequence alignment program for unix-like operating systems It offers a range of multiple alignment methods, L-INS-i (accurate; for alignment of <∼200 sequences), FFT-NS-2 (fast; for alignment of <∼30,000 sequences), etc
- MAFFT alignment and NJ UPGMA phylogeny - CBRC
MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization Kuraku, Zmasek, Nishimura, Katoh 2013 (Nucleic Acids Research 41:W22-W28)
- MAFFT - a multiple sequence alignment program - CBRC
Accurate options (mafft-linsi, mafft-ginsi and mafft-einsi), instead of mafft, can be used for a few hundreds of sequences aligned_sequences must form a monophyletic cluster, as they are converted into a single profile
- MAFFT for Windows - a multiple sequence alignment program
Copy the downloaded zip file into a folder to install MAFFT Better to avoid the Desktop and Documents folders, because these folders may be protected by "Controlled folder access" in "Ransomware protection" in Windows Defender
- MAFFT ver. 7 - a multiple sequence alignment program - CBRC
MAFFT offers various multiple alignment strategies They are classified into three types, (a) the progressive method, (b) the iterative refinement method with the WSP score, and (c) the iterative refinment method using both the WSP and consistency scores
- Manpage of MAFFT - CBRC
Indicates the location of the binary files used by mafft By default, they are searched in usr local lib mafft, but on Debian systems, they are searched in usr lib mafft
- MAFFT ver. 7 - a multiple sequence alignment program - CBRC
MAFFT requires memory space proportional to L2 by default, where L is sequence length When the --memsave option is added or alignment length exceeds a threshold, a linear-space DP algorithm similar to Myers Miller (1988) is used
- MAFFT for linux - a multiple sequence alignment program
Root privileges are necessary % su - Password: ********* # dpkg -i mafft_x xxx-x_amd64 deb # exit % rehash (if necessary) A shell script, mafft, is installed into usr bin and some binaries are installed into usr libexec mafft License deb (maintained by Debian Med) Source Portable package (BSD license) Conda Usage % mafft input > output
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