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- Dali server - Helsinki
The Dali server is a network service for comparing protein structures in 3D You submit the coordinates of a query protein structure and Dali compares them against those in the Protein Data Bank (PDB)
- Dali Tutorial - Helsinki
The Dali server is a useful aid in structural classification It generates overviews of selected portions of structure space and sequence space with just a few mouse clicks
- DaliLite. v5 manual - Helsinki
Dali generates structural alignments using only C-alpha coordinates The database search options use sequence comparison (Blast) for a soft clustering of the PDB
- DaliLite. v4 manual - Helsinki
Although DaliLite v4 can use MPI, the present implementation will not work in a distributed cluster; we run it on a multicore server All nodes must have read access to the internal structure data directories (DALIDATDIR_1, DALIDATDIR_2) and write access to a shared current work directory (CWD)
- Dali server - Helsinki
The Dali server is a network service for comparing protein structures in 3D You submit the coordinates of a query protein structure and Dali compares them against those in the Protein Data Bank (PDB)
- Dali Tutorial 2022: New features - Helsinki
The server takes the 3D coordinates of protein structures as input and returns a list of similar structures, structural alignments and superimposed structures The all against all comparison also returns a structural dendrogram
- AF-DB for Dali - Helsinki
The Dali web server performs equivalent searches but it has long queueing times Sequence searches against the AlphaFold Database can be performed, for example, with the SANSparallel server
- ISS-Dali: fbuzA. HUMAN - Helsinki
If you publish results by the Dali server, please cite: to be published Query: fbuzA Target: HUMAN Preset: sampler Prefilters: 3-D lookup (wolf) = 1 foldseek = 1 Termination criteria: Budget = 2000 Dropoff = 200 kNN = 100000 Radius = 2 0 Timeout [seconds] = 1800 Reason for termination: empty queue Time [seconds]: prefilter 0 00 search 37 04
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