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- BEAST Software - Bayesian Evolutionary Analysis Sampling Trees | BEAST . . .
BEAST is a cross-platform program for Bayesian analysis of molecular sequences using MCMC It is entirely orientated towards rooted, time-measured phylogenies inferred using strict or relaxed molecular clock models
- First Tutorial | BEAST Documentation
Running BEAST for the first time This tutorial will guide you through running BEAST and some of its accessory programs to do a simple phylogenetic analysis If you haven’t already, download and install BEAST following these instructions
- Frequently Asked Questions | BEAST Documentation
BEAST is a cross-platform program for Bayesian analysis of molecular sequences using MCMC It is entirely orientated towards rooted, time-measured phylogenies inferred using strict or relaxed molecular clock models It can be used as a method of reconstructing phylogenies but is also a framework for testing evolutionary hypotheses without conditioning on a single tree topology BEAST uses MCMC
- Downloading and installing BEAST on Windows
Downloading and installing BEAST on Windows BEAST is a software package for phylogenetic analysis with an emphasis on time-scaled trees
- Estimating rates and dates from time-stamped sequences | BEAST . . .
To inform BEAUti BEAST about the sampling dates of the sequences, go to the Tips menu and select the “Use tip dates” option By default all the taxa are assumed to have a date of zero (i e the sequences are assumed to be sampled at the same time; BEAST considers the present or most recent sampling time as time 0)
- Phylogeographic diffusion in discrete space | BEAST Documentation
Running BEAUti Running BEAST Analyzing the BEAST output using Tracer Summarizing and visualizing the trees Visualizing MCC trees and calculating Bayes factor support for rates using SPREAD 4 EXERCISE 2: Identifying predictors for the host switching process Background GLM-diffusion model specification Analyzing the GLM-diffusion model output
- Downloading and installing BEAST on UNIX Linux
Downloading and installing BEAST on UNIX Linux BEAST is a software package for phylogenetic analysis with an emphasis on time-scaled trees
- BEAGLE | BEAST Documentation
Using BEAGLE with BEAST BEAGLE is a high-performance library that can perform the core calculations at the heart of most Bayesian and Maximum Likelihood phylogenetics package It can make use of highly-parallel processors such as those in graphics processing units (GPUs) found in many PCs The current version of BEAGLE will only work with BEAST v1 6 or later Downloading and installing BEAGLE
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