|
- Basic Local Alignment Search Tool - BLAST
The Basic Local Alignment Search Tool (BLAST) finds regions of local similarity between sequences The program compares nucleotide or protein sequences to sequence databases and calculates the statistical significance of matches
- Nucleotide BLAST: Search nucleotide databases using a nucleotide query
Select the sequence database to run searches against No BLAST database contains all the sequences at NCBI BLAST databases are organized by informational content (nr, RefSeq, etc ) or by sequencing technique (WGS, EST, etc ) more
- BLAST+ executables — BLASTHelp documentation
The NCBI provides a suite of command-line tools to run BLAST called BLAST+ This allows users to perform BLAST searches on their own server without size, volume and database restrictions BLAST+ can be used with a command line so it can be integrated directly into your workflow
- Welcome to BLAST Help — BLASTHelp documentation
BLAST tutorials About BLAST¶ NCBI Handbook The Statistics of Sequence Similarity Scores BLAST glossary References Blast+ Command Line Applications User Manual BLAST News directory Other BLAST information¶ Download BLAST Software and Databases Developer information BLAST Searches at a Cloud Provider
- BLAST Basic Local Alignment Search Tool
A BLAST search has four components: query, database, pr ogram, and search purpose goal To discuss effective BLAST program selection, we first need to know what databases are available and what sequences these databases contain
- Frequently Asked Questions — BLASTHelp documentation
Simply paste or type your sequences in the query box, select the appropriate database and click the BLAST button The BLAST parameters will automatically adjust to find matches to short sequences
- Needleman-Wunsch alignment of two nucleotide sequences - BLAST
Enter one or more queries in the top text box and one or more subject sequences in the lower text box Then use the BLAST button at the bottom of the page to align your sequences To get the CDS annotation in the output, use only the NCBI accession or gi number for either the query or subject
- Overview — ElasticBLAST 1. 4. 0 documentation
What is BLAST? The Basic Local Alignment Search Tool (BLAST) finds regions of local similarity between sequences The program compares nucleotide or protein sequences to sequence databases and calculates the statistical significance of matches
|
|
|