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- Install DESeq2 through anaconda - Bioinformatics Stack Exchange
Sounds like you might have an issue with which R Rstudio is running If you didn't install Rstudio through conda, Rstudio may be using its own version of R that is bundled with Rstudio, instead of the one you've installed via conda Assuming that your conda environment name is renv, try running this in the terminal: $ conda activate renv $ conda install r::rstudio -y $ which rstudio Users
- bioconductor - Using `install. packages` with conda-managed R . . .
Conda does handle PyPI packages well, but unfortunately it doesn't handle R packages from CRAN as nicely Bioconductor packages available through BiocManager::install should all be listed with the name bioconductor-<packagename> in the bioconda channel, but other R packages on CRAN might not be
- Understanding DESeq2 design, contrast and results
Understanding DESeq2 design, contrast and results Ask Question Asked 8 years, 2 months ago Modified 8 years, 1 month ago
- Installing DESeq2 in Ubuntu - Bioinformatics Stack Exchange
I am trying to install DESeq2 in my Ubuntu with R version 3 5 1 According to the package repository in Bioconductor the version should be 3 5 gt; R version platform x86_64-pc-linux-gnu
- rna seq - can I download DESeq2 in R 3. 6. 3 in Linux MInt . . .
I am trying to download DESeq2 in R 3 6 3 Is it possible? This is printed when I am trying: Warning in install packages : package ‘DESeq2’ is not available (for R version 3 6 3) Thank you!
- Newest deseq2 Questions - Page 3 - Bioinformatics Stack Exchange
Install DESeq2 through anaconda conda install -c bioconda bioconductor-deseq2 conda
- software usage - How do I tell featureCounts to ignore fragments that . . .
I feed it a BAM file with paired-end reads aligned to a reference genome In the help page of the executable, which I have installed using conda install subread, there is a section about overlaps, including for example the -O option which will assign the reads fragments to all overlapping features What is the default behaviour?
- Highest scored deseq2 questions - Bioinformatics Stack Exchange
DESeq2 for large number of samples takes too much RAM I am trying to run a very large number of transposase-accessible chromatin (ATAC)-seq samples through DESeq2 to find peaks of differential chromatin accessible across my study genome
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