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- BEAST Software - Bayesian Evolutionary Analysis Sampling Trees | BEAST . . .
What is BEAST? BEAST is a cross-platform program for Bayesian analysis of molecular sequences using MCMC It is entirely orientated towards rooted, time-measured phylogenies inferred using strict or relaxed molecular clock models
- First Tutorial | BEAST Documentation
Running BEAST for the first time This tutorial will guide you through running BEAST and some of its accessory programs to do a simple phylogenetic analysis If you haven’t already, download and install BEAST following these instructions
- BEAGLE | BEAST Documentation
To test the installation, run BEAST and when the options dialog box appears, select “Use BEAGLE library” and “Show list of available BEAGLE resources”: The BEAGLE options available in the BEAST dialog box You don’t need to specify a BEAST input file as the information about BEAGLE will be displayed and then BEAST will stop
- FigTree | BEAST Documentation
FigTree is a program for viewing trees, including summary information produced by TreeAnnotator, and producing publication quality figures
- Tracer | BEAST Documentation
Tracer (now at version 1 7 2) is a software package for visualising and analysing the MCMC trace files generated through Bayesian phylogenetic inference Tracer provides kernel density estimation, multivariate visualisation, demographic trajectory reconstruction, conditional posterior distribution summary and more Tracer v1 7 2 can read output files from MrBayes, BEAST, BEAST2, RevBayes
- BEAUti The BEAST and other programs
BEAUti The BEAST and other programs Software packages in the BEAST family Click on the icons for more details Programs distributed as part of the core BEAST package BEAUti | Bayesian Evolutionary Analysis Utility This program is used to import data, design the analysis, and generate the BEAST control file
- Downloading and installing BEAST on UNIX Linux
Downloading BEAST Tip: If you want to install BEAST on the Mac OS X command-line, we strongly recommend using the Homebrew package manager See below for instructions for this BEAST can be downloaded from the following link: BEAST X v10 5 0 - UNIX Linux version 46 2MB This will download a compressed tar archive (a ‘ tgz’ file)
- TreeAnnotator | BEAST Documentation
TreeAnnotator is a program to summarize the information from a sample of trees produced by BEAST onto a single “target” tree The summary information includes the posterior probabilities of the nodes in the target tree, the posterior estimates and HPD limits of the node heights and (in the case of a relaxed molecular clock model) the rates
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